To get the engine and transmission located correctly I had to align the engine and transmission to the center of the frame. Since the previous engine mounts were welded in place I had to remove them by grinding them off and weld new perches in place so I could bolt the new engine mounts on. This makes it easier to replace in the future. Also, the addition of a longer transmission (4L60E) means that the transmission cross-member needed to be moved backward. This video shows all the work that was done to get the engine and transmission in place.
YouTube Link
Here are the photos of the engine and transmission work.