So now that I know where we were supposed to drill
I measured the height for all the upper side moldings. Lowers are self explanatory and can be penciled in anytime. The uppers a little more tricky. Once painted I want to mark everything off before we attach the moldings, partially because with 3M tape along the center of most of them, once they're on they're on.
I'm happy to see both sides match, we really weren't trying that hard
Keep in mind these measurements are to the top of the upper moldings only. The upper moldings on the bed are 1/4" higher at the rear than factory, because one of moldings would have looked bad factory.